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What is a mutation?

A mutation is a change in DNA sequence. Most do nothing, some cause disease, and a few are beneficial.

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A mutation is simply a change in the DNA letters. The word sounds alarming, but most mutations do nothing at all — they land in regions that do not matter, or they change a letter without changing the protein. You carry dozens of new mutations your parents did not have. Only a small minority cause disease, and some are protective.

Mutations range from single-nucleotide substitutions through small insertions and deletions to large structural rearrangements. Consequence depends on location and type: substitutions may be silent, missense or nonsense; insertions and deletions not in multiples of three shift the reading frame. Clinical classification runs from benign through variant of uncertain significance to pathogenic. Germline variants are inherited; somatic variants are acquired and are not.

The kinds that matter for editing

TypeWhat happensWhich editing approach fits
Point substitutionOne letter changedBase editing, if the change is one it can make; otherwise prime editing
Small insertion or deletionA few letters added or lost, often shifting the reading framePrime editing
NonsenseA premature stop signal ends the protein earlyBase or prime editing, depending on the letter
Large deletionA whole exon or gene region lostGene addition, or integrase-based insertion
Repeat expansionA short sequence repeated too many timesExcision or silencing
Toxic gain of functionThe protein acquires a new, harmful behaviourKnockout or silencing — adding a good copy will not help

Which category a disease falls into determines almost everything about how it could be treated.

Germline versus somatic

A germline change is present in every cell and is passed to children. A somatic change happens in some cells during life and is not inherited. All approved and clinical gene-editing therapy is somatic. Editing the germline — embryos, eggs or sperm — is a different act legally and ethically, and is prohibited or unapproved for clinical use in most countries.

Where the analogy breaks down'Mutation' is drifting out of clinical use in favour of 'variant', partly because 'mutation' carries connotations that are unhelpful when talking with families. This site uses 'variant' where a specific change is meant and 'mutation' where the general concept is.
A single inherited letter change can shape a whole family's medical history.
A single inherited letter change can shape a whole family's medical history. Illustration generated for The CRISPR Atlas.

Sources

Connected in the Atlas

Every entry on this site is linked to the others it relates to. These connections are part of the record, not a search result.

Technologies

Base Editing

Learn

What is RNA?